PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0217s00120.1
Common NameLR48_Vigan01g048300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 160aa    MW: 17956.1 Da    PI: 5.0025
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0217s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.92.4e-143088563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                      ++ +r+q+NRe+ArrsR RK++ +e L    +eL++eN ++  ++ + ++ + k+++e+
  Vang0217s00120.1 30 RKRKRMQSNRESARRSRMRKQQHLEGLSAQLDELKKENNEMNRNIGMTTQVYLKVEAEN 88
                      6789*****************************************99999998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.9E-112476No hitNo description
SMARTSM003389.8E-162690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.6112874IPR004827Basic-leucine zipper domain
PfamPF001709.1E-103077IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-113082No hitNo description
CDDcd147021.87E-173179No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MASPGGACSS GSSSLQNSGS EGDRDMVDQR KRKRMQSNRE SARRSRMRKQ QHLEGLSAQL  60
DELKKENNEM NRNIGMTTQV YLKVEAENAI LRAQMAELSN RLNSLNEIIG FINSTNYLVF  120
DEAQETQMFN DCGFMDAWSG IPFNQPIMAS ADNDILMMY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14249RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0217s00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421470.11e-115PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L52e-42BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0L9TJY31e-114A0A0L9TJY3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QZ811e-114A0A0S3QZ81_PHAAN; Uncharacterized protein
STRINGXP_007159436.14e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-39basic leucine-zipper 44
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]