PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0216s00440.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 219aa    MW: 23879.2 Da    PI: 6.008
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0216s00440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.85.6e-062357235
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHH CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAk 35
                      r+R+t+++eq+ +Le+ F++   +p ++e  ++ k
  Vang0216s00440.1 23 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRK 57
                      89*****************9899999999888766 PP
2Wus_type_Homeobox60.24.7e-202267247
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkied 47
                       +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G++++
   Vang0216s00440.1 22 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGG 67
                       589****************************************987 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEDERQKEAK SPRHGPEKSE AVRSRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE  60
KFGAVGGSSS SCSGGGQQGM GGFFSGSSPQ MGFPEIIDHT PPSPSVLFPP FDPNLTFQTG  120
YGGTDISAFI TVFINGIATE LPKGPIDMKT VFGEDVMLVH SSGVPILAND FGFLMQNLQH  180
GESYFLVGRI FKSIASFPNH FQFLVYSFTL NNITLPIF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0216s00440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-167AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417711.12e-68PREDICTED: WUSCHEL-related homeobox 11
SwissprotB8B6449e-24WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I79e-24WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLA0A0L9U8235e-67A0A0L9U823_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RWL96e-67A0A0S3RWL9_PHAAN; Uncharacterized protein
STRINGXP_007161896.11e-61(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.18e-25WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]