PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g18280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRF | ||||||||
Protein Properties | Length: 518aa MW: 56713 Da PI: 7.3433 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 44.2 | 3.4e-14 | 209 | 234 | 2 | 27 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkkl 27 +epgrCrRtDGKkWRCsr+++ ++k+ Vang01g18280.1 209 PEPGRCRRTDGKKWRCSRDAVVDQKM 234 89*********************996 PP | |||||||
2 | QLQ | 62.6 | 1e-21 | 152 | 188 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+PvP +Ll +i+k Vang01g18280.1 152 GPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRK 188 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.0E-12 | 152 | 188 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.5E-16 | 153 | 187 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.473 | 153 | 188 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 14.154 | 208 | 252 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.1E-11 | 209 | 234 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
LMDLGVVGLE GLVGSDSSCA FGSSLASDPE TKHKWYGSGV LKQERSGTAS EDEWRTSKVP 60 KTDDNMSAAS KAMLFHQRNS LLRSNVTLFS EGHNQPQMLS FSSPKSEPLM VDKASLNATL 120 PFSYHQLSSY SRNTGYSSGS ISMHGALAGV RGPFTPSQWM ELEHQALIYK YITANVPVPT 180 HLLIPIRKAL DSAAFCNFST GLLRPNTYPE PGRCRRTDGK KWRCSRDAVV DQKMFMSSKE 240 NSNNASERMQ DGPALPMVPP TLELKPKDPF MIHKHQLPYD ESSSRNNNEF GLVTSDSLLN 300 PSQKRSFGSS SSQKDDSESQ QQHSLRHFID DSPKPQSHHH HHHHRSSVWP ELDNMQSDRT 360 QLSISIPISS SDFMSFTTSS PSNEKLTLSP LRLSREIDPI QMGLGVGSGA PNESNTRQAN 420 WIPITWESSM GGPLGEVLNL SSTNNNSNGS DHCGKNTSAL NLMKDGWDNS PPLGSSPNGV 480 LQKTAFGSLS NSSAGSSPRA ENNNIKEGLY YSAYFSI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g18280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020236136.1 | 0.0 | growth-regulating factor 1 | ||||
TrEMBL | A0A2Z6M6B7 | 0.0 | A0A2Z6M6B7_TRISU; Uncharacterized protein | ||||
STRING | XP_007160951.1 | 1e-157 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2085 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 4e-60 | growth-regulating factor 2 |