PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18260.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 461aa    MW: 49840.2 Da    PI: 5.5697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-10303351355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Vang01g18260.1 303 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 351
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17298368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-11298355No hitNo description
PROSITE profilePS5088815.485300350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16301368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7303351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVWKEDLVGS TVDEQWLRLM EDDGGTVEFV QMGGQENAMG FQHGNENILT CPSSGLSVAN  60
VNVSEMAISS VSMAKPSDVA NPFLASSAWD PLVSLSQAQT FGGSSMVSHT DFANANSSYP  120
LVLENQGITN TSHLVQYMSD SNLGGMVPKV HSYASRGFSE MVGAASFVQH GSADVANSGY  180
PPHYNPIKDT QINGEQSQVE DSIPEEEAPG SGPSGNRRKR GLDHNSTFSP NKNAESETVK  240
DSPGRACDGP KEHEKKPKVE QNNSADLRGK QSAKQAKDNS SQSGEAPKEN FIHVRARRGQ  300
ATNSHSLAER VRREKISERM RLLQELVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK  360
LATVNPELNF DVDRIISKDI LQSRIGHGIS AYGPGINSSH TFPSGNFHGT LAGMPSTSSQ  420
FPPLPQNVLD HEFQSFYGIG YDSNTALDNL GPNGRLKTEL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g18260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430984.10.0PREDICTED: transcription factor bHLH74
RefseqXP_017430985.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A0S3RPL90.0A0A0S3RPL9_PHAAN; Uncharacterized protein
STRINGXP_007160954.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-82bHLH family protein