PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g15570.1
Common NameLR48_Vigan07g249300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 260aa    MW: 28918.6 Da    PI: 7.7209
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g15570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.85.1e-191331761658
                     TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY  16 kgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                     ++++ pr+Y+rC++a +Cpvkkkv+rs edp+++++tYegeHnh
  Vang01g15570.1 133 RDNPSPRAYFRCSFApSCPVKKKVQRSLEDPTILVTTYEGEHNH 176
                     799***********99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007746.9E-15131178IPR003657WRKY domain
PROSITE profilePS5081117.5131179IPR003657WRKY domain
SuperFamilySSF1182907.45E-15132178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-17132177IPR003657WRKY domain
PfamPF031063.1E-14133176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEPTCLDTSL NLNVDPSSVH TDMVLEEELQ RLRRENKRLT EMLTDLCDSY MVLQKQLTQL  60
KNTNFEQDQL ESRKRKAESE CCTNKFGVVN HNNVECSSIT EDSFKRYKDF SSSPKVSKVL  120
VKTEASNNSL VTRDNPSPRA YFRCSFAPSC PVKKKVQRSL EDPTILVTTY EGEHNHGHQR  180
GEIEGGKGSS PVSSPTPTIG SACPTVTLDL VKSGFFETAQ KSSVQQFLVQ QMATSLTRDP  240
NFTTALATAI SGKILQAKW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g15570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429632.10.0PREDICTED: probable WRKY transcription factor 40 isoform X1
TrEMBLA0A0L9V2100.0A0A0L9V210_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RPG80.0A0A0S3RPG8_PHAAN; Uncharacterized protein
STRINGXP_007161095.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-46WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]