PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g13970.1 | ||||||||
Common Name | LR48_Vigan07g227900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 24875.4 Da PI: 5.8423 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.5 | 1.1e-11 | 18 | 50 | 3 | 36 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 W ++Ed++l ++v+++G+ +W++Ia++++ gRt Vang01g13970.1 18 HWRKDEDQKLTQLVQEHGPQDWNAIAQHIQ-GRT 50 5*****************************.**9 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.5e-14 | 50 | 89 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 teE+e+l+ a + +G + W+tIa+ + gRt++ +k++w+ + Vang01g13970.1 50 TEEEERLIAAREVYGAK-WATIAKLFE-GRTDNALKNHWHVL 89 8****************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.6E-17 | 13 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7 | 15 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-11 | 18 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-11 | 18 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-10 | 19 | 53 | No hit | No description |
PROSITE profile | PS51294 | 15.146 | 43 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-5 | 50 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-9 | 51 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 52 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDNSPSAAQN MPNYRVNHWR KDEDQKLTQL VQEHGPQDWN AIAQHIQGRT EEEERLIAAR 60 EVYGAKWATI AKLFEGRTDN ALKNHWHVLI ARKRKEGNNG SLQELMNGSS SSSSHDDALF 120 DMMNFNATQR ALAPVCPSDS LSPMNFGSVP SFSDSFPGKE ESDPFGLLNP AATSGGMMKK 180 GLFHSSSSAF TKFKGSSSSD RKEPHDAGFK DVTFYDFLGV GADDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-18 | 11 | 93 | 2 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g13970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428877.1 | 1e-159 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | A0A0L9V0E3 | 1e-157 | A0A0L9V0E3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161388.1 | 1e-101 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20205 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.1 | 7e-32 | myb domain protein 110 |
Publications ? help Back to Top | |||
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