PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g10880.4
Common NameLR48_Vigan07g201600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 170aa    MW: 18752.2 Da    PI: 9.833
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g10880.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer41.63e-131312960
     ZF-HD_dimer 29 mpsegeegtaaalkCaACgCHRnFHRreveee 60
                    mp+ ge+gt +a+ CaAC+CHRnFHR+e + e
  Vang01g10880.4  1 MPA-GEDGTLEAVICAACNCHRNFHRKEIDGE 31
                    566.888********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-10134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152311.849127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.0E-11128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.18E-2193167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-3297168IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-25106163IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MPAGEDGTLE AVICAACNCH RNFHRKEIDG EMTSFHHRAQ PPPPLHHHHQ FSPYYHHRVP  60
QHPGAGGYLH HHLATPPMAQ HRPLALPAAA SGGGLSSGGG GGGGSKKRFR TKFTQEQKDK  120
MLAFAEQVGW RIQKHDESAV EQFCAETNVE RKVLKVWMHN NKNTLGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-301051641675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g10880.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-157AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429353.11e-104PREDICTED: zinc-finger homeodomain protein 2-like isoform X4
SwissprotQ6YXH54e-52ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0L9V0B61e-102A0A0L9V0B6_PHAAN; Uncharacterized protein
STRINGXP_007141241.11e-95(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-45homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]