PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g06220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 130aa MW: 14282 Da PI: 6.7468 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26 | 3e-08 | 70 | 128 | 2 | 74 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 fYneYA++vGFs + ++ +sk ge + +fvC +e +++ + C+a+++++k+ ++ Vang01g06220.1 70 FYNEYARRVGFSCKAGAKGRSKAIGENMYCEFVCGREDLKRKLAGS--------------CNAMIRIEKKGQN 128 ***********************************99888776555..............6666666555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-5 | 70 | 115 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
LIKACNFCYI QMINMGEGSD HQAMADDGNV EHIGGGVNKA ENNSGSHVEV GVSEPYVGRE 60 FDSEDAAKTF YNEYARRVGF SCKAGAKGRS KAIGENMYCE FVCGREDLKR KLAGSCNAMI 120 RIEKKGQNNW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g06220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017430307.1 | 1e-81 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A0L9UV26 | 2e-80 | A0A0L9UV26_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141585.1 | 4e-70 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 9e-18 | FAR1-related sequence 3 |