PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g05820.1
Common NameLR48_Vigan07g073200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 282aa    MW: 30899.6 Da    PI: 8.1252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g05820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-10202244855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Vang01g05820.1 202 AAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 244
                     569*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-14192253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12193252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.281194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-11196248No hitNo description
SMARTSM003531.0E-11200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-7204244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
LHLGGSFTSL MALSLTSHGV SEYQKCGVEE EGGSQSTNGF SNDSASAITQ SLINFKADEF  60
SSLMQGRESF LSFQQSWMFS KESNLHEGCN QWNHVSPKNN TADMRLVQNF SCSETATCYS  120
SIFNGEKEKK QCESSASGWL YSEPNVHSSS LNESAAQESV LRKRSFMGET MQAANNAKKP  180
CTTASKATKP KSSPSKDPQS VAAKNRRERI SERLKILQEL VPNGSKVDLV TMLEKAISYV  240
KFLQLQVKVL AADEFWPVQG GKAPDISQVR QAIDSILSSQ R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g05820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429999.10.0PREDICTED: putative transcription factor bHLH086
TrEMBLA0A0L9UW960.0A0A0L9UW96_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RKV60.0A0A0S3RKV6_PHAAN; Uncharacterized protein
STRINGXP_007141889.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.14e-54ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]