PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g05730.1
Common NameLR48_Vigan07g074500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 552aa    MW: 60708.8 Da    PI: 4.9488
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g05730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.52.6e-1311665291374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav+ g+++la++l+++  +la ++g +m ++a++f++ALa+r+++        + p et +++ s+ l+    f+e sP+lkf+h
  Vang01g05730.1 166 LVHALMACAEAVQLGNASLASSLVKHAGTLAVSQGGSMGKVASFFAQALARRIYG--------FYPYETLDSSYSDMLHT--HFYESSPYLKFAH 250
                     689****************************************************........55555554455666555..6************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +taN+aIlea++++++vH+iDf+++qGlQWpa++qaLa Rp+gpp +R+ g+g+p+ +  ++++l+++g +La++A++++++fef+ +v+++l+d
  Vang01g05730.1 251 FTANHAILEAFATADTVHVIDFGLKQGLQWPAFMQALAVRPGGPPAFRLSGIGPPRLDdpDSDTLSQVGLKLAELARKIRIQFEFRGFVCNSLAD 345
                     *******************************************************99999*********************************** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+++ L+++ gE +aVn++++lhrll+++v++e+    vL +vk+++P++v+vveqea+hn++ Flerf+eal+yys+lfds+e ++++ +e++ 
  Vang01g05730.1 346 LDPSVLDIRAGEFVAVNSIFELHRLLARPVDIEK----VLATVKRIKPEIVTVVEQEANHNGPVFLERFTEALYYYSSLFDSMEGSVAAPNEQAL 436
                     **********************************....********************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ +++lgr+i+nvvaceg+er+erhetl++Wr+rl+  G++pv+++++a  qa++ll  ++  ++gyrvee++g+l+lgW++rpLv+ SaWr
  Vang01g05730.1 437 VMAEMYLGRQICNVVACEGDERVERHETLGQWRARLGLGGLEPVRMGSNAFRQARMLLGLYPeaGEGYRVEENNGCLLLGWHTRPLVASSAWR 529
                     *************************************************************977889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.7E-262887IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.1E-222898No hitNo description
PROSITE profilePS5098563.655140507IPR005202Transcription factor GRAS
PfamPF035149.0E-129166529IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MGDASEVKGE CSGSGKGKKM FEEEENEDKL LAGVGYKVCS SDMVDVAHKL DQLEMVMEED  60
GISHLASNTV HYDPTDLYGW VQNILNNAPN HTITTNSNNA VIPSPLITVP ENDLTAIPLP  120
YVEDYPQTEN QNCHKRFKSS SSPLWPAISS DNILPVVLVE EAGVYLVHAL MACAEAVQLG  180
NASLASSLVK HAGTLAVSQG GSMGKVASFF AQALARRIYG FYPYETLDSS YSDMLHTHFY  240
ESSPYLKFAH FTANHAILEA FATADTVHVI DFGLKQGLQW PAFMQALAVR PGGPPAFRLS  300
GIGPPRLDDP DSDTLSQVGL KLAELARKIR IQFEFRGFVC NSLADLDPSV LDIRAGEFVA  360
VNSIFELHRL LARPVDIEKV LATVKRIKPE IVTVVEQEAN HNGPVFLERF TEALYYYSSL  420
FDSMEGSVAA PNEQALVMAE MYLGRQICNV VACEGDERVE RHETLGQWRA RLGLGGLEPV  480
RMGSNAFRQA RMLLGLYPEA GEGYRVEENN GCLLLGWHTR PLVASSAWRL APNGLHPVRD  540
QNEMNQDSRY C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6416052813378Protein SCARECROW
5b3h_A2e-6416052812377Protein SCARECROW
5b3h_D2e-6416052812377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g05730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428262.10.0PREDICTED: DELLA protein GAI isoform X1
RefseqXP_017428263.10.0PREDICTED: DELLA protein GAI isoform X2
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1S3U9950.0A0A1S3U995_VIGRR; DELLA protein GAI
STRINGXP_007141902.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]