PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g04370.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SRS | ||||||||
Protein Properties | Length: 478aa MW: 50232.9 Da PI: 8.9134 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 219.4 | 7.9e-68 | 254 | 414 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 gt++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa+++ a +s +++ +k++r +++++++s+t++s+++++ Vang01g04370.2 254 GGTTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLI-ASQTTTTSHTSTSNTTPP 347 5789*************************************************99999999999999999999986.88899999********** PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+ Vang01g04370.2 348 RSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVEN 414 *****999********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-61 | 256 | 413 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 7.8E-27 | 258 | 300 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.8E-29 | 365 | 412 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
YINIYIYTHT HTHKHHIPIT YYKIYVSSSS IVLCFPHTIH PTFIKSTRKL YLVFYFIVFD 60 LRNQALSVVA TTRRLPSDSG AFADWAATGS SAAAAAAGGR AVPVDDLSLG FNAGPAAPAA 120 ATGPTSGMWS GANRSINYPE MGMFVVAPAS SFHHHHHQQQ PPHDPVMADS LNPATALGVG 180 VIPLLAATPC LESDNFLGNR PRGGGIQFWQ DQGPHQSHYM KKQQQQGLLD QSNTSSGNLV 240 QTSGGLTASG TSSGGTTTCQ DCGNQAKKDC TNRRCRTCCK SRGFDCPTHV KSTWVPAARR 300 RERQLMTAAT AAVAGSSGST SGTKKPRLIA SQTTTTSHTS TSNTTPPRSF DTSSSHQDAG 360 FKESLPGQVR APAVFKCVRV TAVEDGQDEY AYQAVVKIGG HVFKGFLYDQ GVENRDVYPN 420 LSELHLGGGN GGSGSGGSGG VGRNGVSSSP MMDPSDVYAG SGGGLLGGSS AYGNPMN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g04370.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428493.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 4e-82 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A0S3RJT1 | 0.0 | A0A0S3RJT1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141493.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 2e-71 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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