PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g04370.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 351aa MW: 36636.4 Da PI: 8.4892

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g04370.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.3	3.9e-68	127	287	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 gt++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa+++ a +s +++ +k++r +++++++s+t++s+++++ Vang01g04370.1 127 GGTTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLI-ASQTTTTSHTSTSNTTPP 220 5789***********************************************99999999999999999999986.88899999****** PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+ Vang01g04370.1 221 RSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVEN 287 *999******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.7E-62	129	286	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.1E-27	131	173	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.8E-29	238	285	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MWSGANRSIN YPEMGMFVVA PASSFHHHHH QQQPPHDPVM ADSLNPATAL GVGVIPLLAA 60 TPCLESDNFL GNRPRGGGIQ FWQDQGPHQS HYMKKQQQQG LLDQSNTSSG NLVQTSGGLT 120 ASGTSSGGTT TCQDCGNQAK KDCTNRRCRT CCKSRGFDCP THVKSTWVPA ARRRERQLMT 180 AATAAVAGSS GSTSGTKKPR LIASQTTTTS HTSTSNTTPP RSFDTSSSHQ DAGFKESLPG 240 QVRAPAVFKC VRVTAVEDGQ DEYAYQAVVK IGGHVFKGFL YDQGVENRDV YPNLSELHLG 300 GGNGGSGSGG SGGVGRNGVS SSPMMDPSDV YAGSGGGLLG GSSAYGNPMN *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MWSGANRSIN YPEMGMFVVA PASSFHHHHH QQQPPHDPVM ADSLNPATAL GVGVIPLLAA  60
TPCLESDNFL GNRPRGGGIQ FWQDQGPHQS HYMKKQQQQG LLDQSNTSSG NLVQTSGGLT  120
ASGTSSGGTT TCQDCGNQAK KDCTNRRCRT CCKSRGFDCP THVKSTWVPA ARRRERQLMT  180
AATAAVAGSS GSTSGTKKPR LIASQTTTTS HTSTSNTTPP RSFDTSSSHQ DAGFKESLPG  240
QVRAPAVFKC VRVTAVEDGQ DEYAYQAVVK IGGHVFKGFL YDQGVENRDV YPNLSELHLG  300
GGNGGSGSGG SGGVGRNGVS SSPMMDPSDV YAGSGGGLLG GSSAYGNPMN *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g04370.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017428493.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	5e-84	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0S3RJT1	0.0	A0A0S3RJT1_PHAAN; Uncharacterized protein
STRING	XP_007141493.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	4e-71	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]