PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g03800.1
Common NameLR48_Vigan07g091900, LR48_Vigan07g092000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 480aa    MW: 52996 Da    PI: 8.1401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g03800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.5e-33139196260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Vang01g03800.1 139 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGTHNHPK 196
                     8****************************************.***************85 PP
2WRKY1079.5e-34310368159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Vang01g03800.1 310 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 368
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28132197IPR003657WRKY domain
SuperFamilySSF1182901.44E-25137197IPR003657WRKY domain
SMARTSM007741.4E-36138196IPR003657WRKY domain
PfamPF031067.0E-26139195IPR003657WRKY domain
PROSITE profilePS5081123.778139197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-38295370IPR003657WRKY domain
SuperFamilySSF1182909.15E-30302370IPR003657WRKY domain
PROSITE profilePS5081138.147305370IPR003657WRKY domain
SMARTSM007741.2E-39310369IPR003657WRKY domain
PfamPF031063.9E-26311368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MQFTMVVGKI LPSPTTGAFV SQSFNWKSSS GGNQQIVKEE DKSFSNFSFQ TQTRPPASST  60
LTYQSSNVAV QAQNPWNFQD ATKQDSFSSG KSMMKTENSS SMHSFPPEIA SVQTNHSNGF  120
QSDFGNYPPQ SQTLNRKSDD GYNWRKYGQK QVKGSENPRS YYKCTYPNCP TKKKVERSLD  180
GQITEIVYKG THNHPKPQST RRNSSSSSSL PIPPSNPISN EIQDQSYATH GSGQMDSAAT  240
PDNSSISIGD DDFEQSSQKC KSGGDEYDED EPDAKRWKIE GENEGMSAPG SRTVREPRVV  300
VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHPG CPVRKHVERA SHDLRAVITT  360
YEGKHNHDVP AARGSGSHSV NRPLPNNAAN PTTAATAIRP LPVIHHSDNS VQSQRPQAPP  420
SGQSPFTLEM LQSPGNFGFS SFGNPMGSYV NHQQLSDNVF SSRTKEEPRD DLFLESLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37139371878Probable WRKY transcription factor 4
2lex_A2e-37139371878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g03800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877000.0KM587700.1 Glycine max clone GmWRKY42 WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431001.10.0PREDICTED: probable WRKY transcription factor 25
RefseqXP_017431135.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotQ6B6R41e-134WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0L9UWH80.0A0A0L9UWH8_PHAAN; Uncharacterized protein
STRINGXP_007142085.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-111WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]