PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g02950.4
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 361aa    MW: 41215.2 Da    PI: 8.9618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g02950.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-057899223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ Cg +F+ + +L +H+++H
  Vang01g02950.4 78 TCEECGVTFKKHAYLLQHMQSH 99
                    6*******************99 PP
2zf-C2H218.45.9e-06105129123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+  dC+ s++rk++L+rH+ +H
  Vang01g02950.4 105 FVCTvdDCHASYRRKDHLTRHLLLH 129
                     89********************998 PP
3zf-C2H213.60.0002134159123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C+  Fs + n++rH    H
  Vang01g02950.4 134 FKCPvvNCNIEFSLQGNMQRHVEEiH 159
                     89*******************98777 PP
4zf-C2H217.98.6e-06174198123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp   Cgk F+  s+Lk+H  +H
  Vang01g02950.4 174 HVCPeiGCGKGFRFASQLKKHEDSH 198
                     79*******************9888 PP
5zf-C2H214.20.00013265290123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++C+   C+ +Fs ksnL +H +  H
  Vang01g02950.4 265 FQCEfkGCSCTFSKKSNLDKHKKAvH 290
                     89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355283356IPR015880Zinc finger, C2H2-like
SMARTSM003550.0187799IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-67798IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.3877104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-1185139No hitNo description
Gene3DG3DSA:3.30.160.603.7E-1299131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.221105134IPR007087Zinc finger, C2H2
SMARTSM003550.012105129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107129IPR007087Zinc finger, C2H2
SuperFamilySSF576676.17E-5132160No hitNo description
Gene3DG3DSA:3.30.160.602.8E-4132160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.159134164IPR007087Zinc finger, C2H2
SMARTSM003550.0054134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6168198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016174198IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408174203IPR007087Zinc finger, C2H2
PROSITE patternPS000280176198IPR007087Zinc finger, C2H2
SMARTSM003550.92206231IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4207231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280208231IPR007087Zinc finger, C2H2
SMARTSM0035535234255IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6246287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-9249304No hitNo description
PROSITE profilePS5015713.609265295IPR007087Zinc finger, C2H2
SMARTSM003550.0098265290IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280267290IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5289319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.7296322IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280298322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
LHSSICSLYL ITKTMVEAVT IEERPKSRDI RRYFCQYCGI CRSKKTLITS HINSQHKEED  60
EKARKETDPE TESSKSNTCE ECGVTFKKHA YLLQHMQSHS PERPFVCTVD DCHASYRRKD  120
HLTRHLLLHE GKTFKCPVVN CNIEFSLQGN MQRHVEEIHD GSSTAAADKS HKQHVCPEIG  180
CGKGFRFASQ LKKHEDSHVK LESIEVVCLE PGCMKHFANV QGLRAHVNTS HQYMTCDICG  240
SKQLKKNIKR HLRSHEADSS SSKTFQCEFK GCSCTFSKKS NLDKHKKAVH LKEKPFRCGF  300
PDCGMRFAYK HVRDNHEKTA KHVFTLVSSF SFWVILKKLM QNSGQGRGEG GRENVLLLKC  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-158122619155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-158122619155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g02950.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-161AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429048.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-116TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0L9UUX00.0A0A0L9UUX0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJL20.0A0A0S3RJL2_PHAAN; Uncharacterized protein
STRINGXP_007142319.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-118transcription factor IIIA