PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g00680.1

Common Name

LR48_Vigan07g002000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SAP

Protein Properties

Length: 334aa MW: 37644.5 Da PI: 6.1794

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g00680.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	474.3	8e-145	1	289	40	333
SAP 40 anevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvt 134 +nev+pePfleala qvaida++++Grlaaa+ala f+vcstwr+vsrsdllw++ltrriWrrt ++rdtW+ eyi +hrta+nf+t+r s++t Vang01g00680.1 1 MNEVLPEPFLEALANQVAIDAANYNGRLAAAQALAYFFRVCSTWREVSRSDLLWEHLTRRIWRRTFRVRDTWHTEYINWHRTATNFETGRLSFMT 95 79******************************************************************************************* PP SAP 135 lqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgag 229 ++fdp+ ++ l+Crcl+lsd+ la+Gf+dG+vr+fdlet hvst+l++h++++G++sr+vsGi+i+ds ++fa+ldGdi+v++i+++g Vang01g00680.1 96 PRFDPS-----EHRRGLICRCLSLSDTRLACGFVDGTVRVFDLETYDHVSTYLSDHGHLFGPYSRSVSGIIITDSDITFARLDGDIYVDAINVHG 185 *7.....35689*************************************************************************** PP SAP 230 aaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrl 324 +++arr++ G v+n G+lv faG+ r wvGl+aG++ af++W+ae+ e+ f+GGsltdPe+vmGWhmltel++ vGrvrvte e++vaCt lrl Vang01g00680.1 186 QSQARRVVSGFVMNSGVLVGFAGTRRRWVGLFAGIAEGAFQVWNAESGERLFLGGSLTDPETVMGWHMLTELVDPVGRVRVTEDEFVVACTGLRL 280 ******************************************************************************************* PP SAP 325 vvfdlrnqg 333 ++f+ n++ Vang01g00680.1 281 ICFNAWNPE 289 **99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.1280.50	2.2E-6	32	105	No hit	No description
SuperFamily	SSF81383	4.8E-8	32	81	IPR001810	F-box domain
SuperFamily	SSF50998	5.89E-7	96	322	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily
Gene3D	G3DSA:2.130.10.10	4.5E-6	106	167	IPR015943	WD40/YVTN repeat-like-containing domain
Gene3D	G3DSA:2.130.10.10	4.5E-6	216	320	IPR015943	WD40/YVTN repeat-like-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009554	Biological Process	megasporogenesis
GO:0009908	Biological Process	flower development
GO:0030163	Biological Process	protein catabolic process
GO:0046622	Biological Process	positive regulation of organ growth
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MNEVLPEPFL EALANQVAID AANYNGRLAA AQALAYFFRV CSTWREVSRS DLLWEHLTRR 60 IWRRTFRVRD TWHTEYINWH RTATNFETGR LSFMTPRFDP SEHRRGLICR CLSLSDTRLA 120 CGFVDGTVRV FDLETYDHVS TYLSDHGHLF GPYSRSVSGI IITDSDITFA RLDGDIYVDA 180 INVHGQSQAR RVVSGFVMNS GVLVGFAGTR RRWVGLFAGI AEGAFQVWNA ESGERLFLGG 240 SLTDPETVMG WHMLTELVDP VGRVRVTEDE FVVACTGLRL ICFNAWNPEQ EEGRLCVRVF 300 LRAGEVNSMV GDDRHVAISS NNINLLDFGV QNP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g00680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017428449.1	0.0	PREDICTED: transcriptional regulator STERILE APETALA
Swissprot	Q9FKH1	8e-84	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A0L9UUB0	0.0	A0A0L9UUB0_PHAAN; Uncharacterized protein
STRING	XP_007142480.1	1e-174	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7687	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	2e-79	SAP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]