PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0184s00120.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 407aa MW: 44867.8 Da PI: 6.5109 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.4 | 4.3e-15 | 195 | 229 | 21 | 56 |
G2-like 21 LGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 L G +kA+P++ile+m++++Lt+++++SHLQkYR++ Vang0184s00120.2 195 L-GVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 229 6.9*******************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.34E-7 | 194 | 232 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-15 | 194 | 229 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.6E-13 | 194 | 232 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 407 aa Download sequence Send to blast |
LLYISGVCFA FVVIYSFIPR LKSRLIFMLA VSPLRSTRDE EQGEMESFSI GTDDFADLSE 60 GNLLESINFD DLFMGINDDE DVLPDLEMDP EMLAEFSLSE ESEIVSSVSV VNNKSDDRNE 120 NNIVTTEKQD EVIAANFCSD SGSNSGSSRG EEIASKSEES IHSVVVNPSP KESEKGRKSS 180 THSRNNPQGK RKVKLGVDKA VPSRILEIMG IDCLTRHNIA SHLQKYRSHR KHLLAREAEA 240 ARLSQRKQFM GAASVGRGGG GSKRDVNPWL APTMGFPHMT PMHHFRPFHV WGHHTMDQSF 300 MHMWPKHLPY SPSPPAWPPR TAPSPPPPDP LYWHQHQRAP NAPTPGTPCF PPPLTSTSKE 360 SIDAAISDVL SKPWLPLPLG LKGPALDGVM GELQRQGIPK IPPSCA* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0184s00120.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423186.1 | 0.0 | PREDICTED: transcription activator GLK1 | ||||
TrEMBL | A0A0L9UM08 | 0.0 | A0A0L9UM08_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SHP8 | 0.0 | A0A0S3SHP8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007149809.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44190.1 | 7e-37 | GOLDEN2-like 2 |