PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0172s00220.1

Common Name

LR48_Vigan03g245300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 227aa MW: 26322.4 Da PI: 7.979

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0172s00220.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.8	4.7e-45	4	134	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppG+rF Pt+eel+++yL++k+eg++ ++++vi+ vdiy+++P++Lp+ + + ++++w+fF++r++++a+g r++r t++gyWkatg+ Vang0172s00220.1 4 MPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQisgeA-SLrDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGS 95 79**************************99************645532.2235669*************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++v+s++++ +g+k+t+vfy+grap+g ktdW m+ey+ Vang0172s00220.1 96 PNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYT 134 ************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-48	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	48.476	4	157	IPR003441	NAC domain
Pfam	PF02365	1.2E-22	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MDVMPPGYRF YPTEEELISF YLHNKLEGER EDMNRVIPVV DIYDYNPSQL PQISGEASLR 60 DTEQWFFFIP RQESEARGGR PKRLTTTGYW KATGSPNHVY SSDNRIIGIK RTMVFYSGRA 120 PNGAKTDWKM NEYTAIKGEP SQLQLRKEFS LCRVYKKSKC LRAFDRRPPP RRNTTRHSIA 180 ENGEEQEKGS ISTCYDYHQH QMLERSATCS PESSSSGDLD HDQPTLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-34	4	157	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-34	4	157	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-34	4	157	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-34	4	157	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	4	157	20	168	NAC domain-containing protein 19
3swm_B	2e-34	4	157	20	168	NAC domain-containing protein 19
3swm_C	2e-34	4	157	20	168	NAC domain-containing protein 19
3swm_D	2e-34	4	157	20	168	NAC domain-containing protein 19
3swp_A	2e-34	4	157	20	168	NAC domain-containing protein 19
3swp_B	2e-34	4	157	20	168	NAC domain-containing protein 19
3swp_C	2e-34	4	157	20	168	NAC domain-containing protein 19
3swp_D	2e-34	4	157	20	168	NAC domain-containing protein 19
4dul_A	2e-34	4	157	17	165	NAC domain-containing protein 19
4dul_B	2e-34	4	157	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0172s00220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-150	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417978.1	1e-172	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	8e-71	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0L9U8L9	1e-170	A0A0L9U8L9_PHAAN; Uncharacterized protein
STRING	XP_007162925.1	1e-149	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-71	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]