PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0162s00360.3

Common Name

LR48_Vigan11g042700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 286aa MW: 30301.4 Da PI: 11.017

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0162s00360.3	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119	5.9e-37	16	112	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ +++ + + ++s + Vang0162s00360.3 16 PQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGTLKIPTTSPSDPelgdp 108 57999***********************************************************88888444222222222222222222222 PP TCP 89 ...k 89 k Vang0162s00360.3 109 pekK 112 2211 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.7E-31	21	124	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.141	22	76	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MSMTVSKALA QAQAQPQKRA STKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE 60 TIRWLLEHAE PAIIAATGTG TVPAIAMSVN GTLKIPTTSP SDPELGDPPE KKKRKRPANS 120 AYVDVNDGAV SVPAGLASSN KQSSRTITTT ASTTTPIPQH TAIPLPQGVV PVWAVPSNAV 180 VPTAGAFFVV PQAASFQHHP QFFTIARPIS AFVSSMVTPV QLQPTSTSSS ANANPSSTAP 240 SSKSPARATV MAPTTTTTTH MLRDFSLEIY DKQELQFMSR ASSKH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	116	EKKKRKRP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00638	PBM	Transfer from Lj0g3v0004489	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0162s00360.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017441514.1	0.0	PREDICTED: transcription factor TCP9
Swissprot	O64647	3e-89	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A0L9VRK8	0.0	A0A0L9VRK8_PHAAN; Uncharacterized protein
STRING	XP_007134948.1	1e-163	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-85	TCP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]