PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0156s00490.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 381aa    MW: 43386 Da    PI: 10.4461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0156s00490.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-15228274455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+ Y+ksLq
  Vang0156s00490.2 228 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAISYLKSLQ 274
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-19221278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-19222284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.974224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-16227278No hitNo description
PfamPF000107.0E-13228274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-17230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MELLWHNGQV VMQSQNHRSL RKPMPPPRNS HDASAAGPSE AREIRPQLDN FNQHLFMQEG  60
EMASWLHYPI DVDDVPPLDQ AFCADFLYSP PTVNNSTAMQ TLATSQLTDH RPMSAPPRPP  120
IPLPRRLEPK TPNFAYFARH NTRAAEESVK ASAKESTGWI PARRRPQRQR RFREFRKLVF  180
FYFYAFVLKG PWKGTHANGG VKDVDFESEA KKQARGSTST KRSRAAEVHN LSERRRRDRI  240
NEKMRALQEL IPRCNKSDKA SMLDEAISYL KSLQLQVQVD SSFFSTAAAH LGPRFPMPPF  300
HMPRVPAPDS SRMQAENQSD KNMVAAGPPD PNHSRLPNFT DPYQQYLGPH QMQFQVIQNQ  360
AMNQPNVGKP STSRDNPESR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163177RRPQRQRRFREFRKL
2232237ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0156s00490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914911.11e-166transcription factor PIF1 isoform X2
TrEMBLA0A0L9TH111e-174A0A0L9TH11_PHAAN; Uncharacterized protein
STRINGGLYMA03G32747.31e-136(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.14e-35bHLH family protein