PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G28800.1
Common NameBHLH56, EN106, F16A16.90
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 445aa    MW: 49286.1 Da    PI: 7.6849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G28800.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16259305455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +hn +ErrRR++iN+++ +L++l+P +      K +K+++L  A+eY+ksLq
  AT4G28800.1 259 MHNLAERRRREKINEKMKTLQQLIPRC-----NKSTKVSTLDDAIEYVKSLQ 305
                  7*************************8.....699****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.56E-17251309No hitNo description
SuperFamilySSF474593.01E-19253319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.492255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-14259305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-20259313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MQFDESDARV WIWFEIRRED DIVELLWQSG QVVGTNQTHR QSYDPPPILR GSGSGRGEEN  60
APLSQPPPHL HQQNLFIQEG EMYSWLHHSY RQNYFCSELL NSTPATHPQS SISLAPRQTI  120
ATRRAENFMN FSWLRGNIFT GGRVDEAGPS FSVVRESMQV GSNTTPPSSS ATESCVIPAT  180
EGTASRVSGT LAAHDLGRKG KAVAVEAAGT PSSGVCKAET EPVQIQPATE SKLKAREETH  240
GTEEARGSTS RKRSRTAEMH NLAERRRREK INEKMKTLQQ LIPRCNKSTK VSTLDDAIEY  300
VKSLQSQIQG MMSPMMNAGN TQQFMPHMAM DMNRPPPFIP FPGTSFPMPA QMAGVGPSYP  360
APRYPFPNIQ TFDPSRVRLP SPQPNPVSNQ PQFPAYMNPY SQFAGPHQLQ QPPPPPFQGQ  420
TTSQLSSGQA SSSKEPEDQE NQPTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250267RKRSRTAEMHNLAERRRR
2263268ERRRRE
3264269RRRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402561000.0
Expression AtlasAT4G28800-
AtGenExpressAT4G28800-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G28800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G28800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0353530.0AL035353.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16A16 (ESSAII project).
GenBankAL1615730.0AL161573.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001329392.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9SVU70.0BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A1P8B7L80.0A0A1P8B7L8_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGAT4G28800.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Representative plantOGRP25816128
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  3. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  4. Rehrauer H, et al.
    AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.
    Plant Physiol., 2010. 152(2): p. 487-99
    [PMID:20032078]