PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0134s00610.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 450aa    MW: 50913.4 Da    PI: 6.7889
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0134s00610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind71.61.5e-22214716102
                       TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.................................. CS
      HSF_DNA-bind  16 keliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.................................. 74 
                       + +isws+ g sfvv+d++ fa +vLp+ Fkh+nf+SFvRQLn+Y   k ++ ++++ +                                  
  Vang0134s00610.1   2 DPIISWSSAGVSFVVWDPTLFAIHVLPRNFKHNNFSSFVRQLNTYVDVKNRTGSRRTVAivgisssagsvprflfcaashnllcqrditlclc 94 
                       569******************************************766666666665559********************************* PP

                       .........................XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
      HSF_DNA-bind  75 .........................kekiweFkhksFkkgkkellekikrkks 102
                                                +++ weF ++ F++gk+ ll++i+r+++
  Vang0134s00610.1  95 kacfefsqiansntasfapngfrkiDSDKWEFYNEAFQRGKRYLLKNIQRRRN 147
                       *******99999999888877765449***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.4E-231145IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-25254IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-15253IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-203145IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-25113145IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
LDPIISWSSA GVSFVVWDPT LFAIHVLPRN FKHNNFSSFV RQLNTYVDVK NRTGSRRTVA  60
IVGISSSAGS VPRFLFCAAS HNLLCQRDIT LCLCKACFEF SQIANSNTAS FAPNGFRKID  120
SDKWEFYNEA FQRGKRYLLK NIQRRRNPHP HQVGRHIVHW SDAGKAGLEF DIERLGKERS  180
VLMQEVVELR QQQRTTLHRA RQVNQRLQSA EVIHKQMLSF LARLLENPAL LTCLQHEKEQ  240
RDVESPKVRR RFVKQHQERT GISDFLKEGQ IVSYQPDWRN VTISSKIPEM CPTSLGGCSN  300
YLSHDLAKEL SEGAENLVSD GLAPLHEVMP TSDTIGLKSS SFGLEDTLLK GKTVMSSNQE  360
DLLAEEIVSF PEDLTNEAGF PEFSPLVETE SIIKPEDKWN TSFHFSGAPP ATNHEGQEFR  420
FISGMSDIWD TCSLWATQSF RTDDPALDE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0134s00610.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417135.10.0PREDICTED: heat stress transcription factor A-3
SwissprotQ8GYY14e-34HSFA3_ARATH; Heat stress transcription factor A-3
TrEMBLA0A0L9U8680.0A0A0L9U868_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZ090.0A0A0S3RZ09_PHAAN; Uncharacterized protein
STRINGGLYMA03G34900.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-36heat shock transcription factor A3
Publications ? help Back to Top
  1. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hu Z, et al.
    Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis.
    Plant J., 2015. 84(6): p. 1178-91
    [PMID:26576681]
  5. Song C,Chung WS,Lim CO
    Overexpression of Heat Shock Factor Gene HsfA3 Increases Galactinol Levels and Oxidative Stress Tolerance in Arabidopsis.
    Mol. Cells, 2016. 39(6): p. 477-83
    [PMID:27109422]
  6. Kim GD,Cho YH,Lee BH,Yoo SD
    STABILIZED1 Modulates Pre-mRNA Splicing for Thermotolerance.
    Plant Physiol., 2017. 173(4): p. 2370-2382
    [PMID:28223317]
  7. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]