PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0134s00500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 142aa MW: 16460.9 Da PI: 9.6184 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.9e-19 | 50 | 104 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle+Le+ F+++ +++ e++ +L+++lgL+ r++ vWFqNrR+++k Vang0134s00500.1 50 EKKKRLTSNQLEILERSFQEETKLDPEKKMKLSRELGLQPRKIAVWFQNRRTRWK 104 67788*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.6 | 2.5e-36 | 50 | 132 | 1 | 83 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 ekk+rl+++q+++LE+sF+ee+kL+pe+K++l+reLglqpr++avWFqnrR R+ktkqlE+ y+aLk++yd +++e+++L++e Vang0134s00500.1 50 EKKKRLTSNQLEILERSFQEETKLDPEKKMKLSRELGLQPRKIAVWFQNRRTRWKTKQLEHLYDALKHQYDVISNEKQKLQEE 132 69******************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-20 | 38 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.718 | 46 | 106 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-17 | 48 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.47E-15 | 49 | 107 | No hit | No description |
Pfam | PF00046 | 5.5E-17 | 50 | 104 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 52 | 113 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 81 | 104 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 142 aa Download sequence Send to blast |
MVITTRSSNT LLLFQRNPLC CTCSGVEVQQ ATLLETGEGS IPSMHNGSKE KKKRLTSNQL 60 EILERSFQEE TKLDPEKKMK LSRELGLQPR KIAVWFQNRR TRWKTKQLEH LYDALKHQYD 120 VISNEKQKLQ EEGLCHERHP G* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 98 | 106 | RRTRWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0134s00500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409938.1 | 2e-71 | PREDICTED: homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q4PSR7 | 1e-37 | ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22 | ||||
TrEMBL | A0A0S3RYY5 | 5e-70 | A0A0S3RYY5_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA19G37380.2 | 5e-60 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36610.1 | 4e-40 | homeobox protein 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|