PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G36610.1 | ||||||||
Common Name | ATHB22, ATHB-22, F13K3.1, F1O11.24, HB22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 185aa MW: 21831.9 Da PI: 9.122 | ||||||||
Description | homeobox protein 22 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.5 | 7.3e-16 | 70 | 133 | 2 | 57 |
T--SS--HHHHHHHHHHHH........HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFe........knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +k+ ++t+eql+ Le+ F+ ++++++ +++ +L+k+lgL+ rq+ vWFqNr+a++k+ AT2G36610.1 70 KKKKKMTSEQLKFLERSFQeeiklnpdRKMKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKN 133 78999**************999999877999999****************************95 PP | |||||||
2 | HD-ZIP_I/II | 87.6 | 1.6e-28 | 99 | 169 | 22 | 92 |
HD-ZIP_I/II 22 ekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kL+p+rK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d +++e+e L++e +L++ ++ AT2G36610.1 99 MKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDIVSREKELLQEELIQLKSMIR 169 59****************************************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.24E-15 | 55 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.115 | 66 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-15 | 68 | 138 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-13 | 70 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.64E-13 | 70 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-18 | 72 | 141 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.7E-5 | 105 | 114 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.7E-5 | 114 | 130 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007131 | developmental stage | seedling development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEYWSSSFID GASSSSFISP FYNFDHFSGN QDNRCLGTMM GAQQDILHVP LAMVESGYGE 60 ESNSFNGQEK KKKKMTSEQL KFLERSFQEE IKLNPDRKMK LNPDRKMKLS KELGLQPRQI 120 AVWFQNRKAR WKNKQLEHLY ESLRQEFDIV SREKELLQEE LIQLKSMIRE DSSCKKKQTW 180 EKACS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 265209_at | 0.0 | ||||
Expression Atlas | AT2G36610 | - | ||||
AtGenExpress | AT2G36610 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00049 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G36610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT2G36610, AT3G28920, AT3G50890, AT5G15210, AT5G65410, AT1G14440, AT1G26960, AT1G69600, AT1G75240 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G36610 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056569 | 0.0 | DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_850266.1 | 1e-135 | homeobox protein 22 | ||||
Swissprot | Q4PSR7 | 1e-136 | ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22 | ||||
TrEMBL | D7LJ55 | 1e-112 | D7LJ55_ARALL; Predicted protein | ||||
STRING | AT2G36610.1 | 1e-134 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 | Representative plant | OGRP129 | 16 | 189 |
Link Out ? help Back to Top | |
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Phytozome | AT2G36610.1 |
Entrez Gene | 818233 |
iHOP | AT2G36610 |
wikigenes | AT2G36610 |