PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0114s00150.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 792aa    MW: 87910.6 Da    PI: 5.8157
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0114s00150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2084139156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Vang0114s00150.1  84 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMK 139
                       688899***********************************************998 PP
2START1494.3e-472855092206
                       HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       la + ++elvk+ + +ep+W +ss    e +n +e  ++f+  ++       ++ea+r++ vv+m++++lv  +ld   +W e ++    + +
  Vang0114s00150.1 285 LAASSMAELVKMCQTNEPLWIRSSdgerEVLNFEEHARIFPCPQNlkhrseLRTEASRDTSVVIMNSVTLVDAFLDGQ-KWMELFPsivsRSK 376
                       78899*******************7777777778888888777779***99***************************.*******9999*** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                       t++ issg      g+lqlm+ae+q+lsplv+ R+  f+Ry++q  ++g+w+ivd  vd+  ++  ++s+ +  ++ Sg++i++++ng+s+vt
  Vang0114s00150.1 377 TVQIISSGasghasGTLQLMYAEFQVLSPLVStRETHFLRYCQQnAEEGTWAIVDFPVDNFHQNF-HPSYPKYCRRSSGCVIQDMPNGYSRVT 468
                       ***********************************************************999998.899999999****************** PP

                       EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       wveh+ ++++ +h+++   v sg+a+ga++w+  lqrqce+
  Vang0114s00150.1 469 WVEHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCER 509
                       ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-1975142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-2177146IPR009057Homeodomain-like
PROSITE profilePS5007116.92581141IPR001356Homeobox domain
SMARTSM003898.8E-1982145IPR001356Homeobox domain
CDDcd000862.40E-1884142No hitNo description
PfamPF000467.2E-1884139IPR001356Homeobox domain
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PROSITE profilePS5084842.442275512IPR002913START domain
SuperFamilySSF559611.07E-31276511No hitNo description
CDDcd088754.62E-111279508No hitNo description
SMARTSM002341.4E-30284509IPR002913START domain
PfamPF018522.8E-39285509IPR002913START domain
SuperFamilySSF559614.26E-19527765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MYGDCQVMSS MGGNVVVNSD TLFSSSIQNS NFNFIPTMPF QPFPSMKEED MLLRGKEEME  60
SGSGSEQVED KSGNEQESEQ PTKKKRYHRH TARQIQEMEA LFKECPHPDD KQRLKLSHEL  120
GLKPRQVKFW FQNRRTQMKA QQDRADNIIL RAENETLKSE NYRLQAALRN VMCPNCGGQC  180
IMGADLGLDE HQLRMENARL REELERVCCL TSRYTGRSLQ TMAAGPTLMA PSLDLDMNIY  240
PRHYSDPVAP CTEMIPVPML PPEASPFAEG GGILMEEEKS LALELAASSM AELVKMCQTN  300
EPLWIRSSDG EREVLNFEEH ARIFPCPQNL KHRSELRTEA SRDTSVVIMN SVTLVDAFLD  360
GQKWMELFPS IVSRSKTVQI ISSGASGHAS GTLQLMYAEF QVLSPLVSTR ETHFLRYCQQ  420
NAEEGTWAIV DFPVDNFHQN FHPSYPKYCR RSSGCVIQDM PNGYSRVTWV EHAKVEEKPV  480
HQIFSNYVYS GMAFGAQRWL GVLQRQCERV ASLMARNISD LGVIPSPEAR KNLMKLAQRM  540
IKTFGLNMST SGGQSWTAIS DSPEDTVRIT TRKVTEPGQP NGVILSAVST TWLPYSHTKV  600
FDLLRDERHR SQMDALSNGN SLNEVAHIAN GSHPGNCISL LRINVASNSS QNVELMLQES  660
CTDQSGSLVV YTTIDVDSIQ LAMSGEDPSC IALLPQGFMI VPMLSSPNVD TPINANSSES  720
PSLNSGCLLT MGLQVLASTI PSAKLNLSSV TAINNHLCNT LHQIEGALSS SSENGTNFLC  780
TEATVSAPPK Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0114s00150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427666.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X2
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0S3T3420.0A0A0S3T342_PHAAN; Uncharacterized protein
STRINGXP_007158253.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7