PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0112s00120.1
Common NameLR48_Vigan04g146300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 306aa    MW: 34182.4 Da    PI: 6.5074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0112s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29e-061391781255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Vang0112s00120.1 139 RREKISERMKVLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 178
                       9*****************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-13117192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.53E-8118182No hitNo description
PROSITE profilePS5088811.477127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-4134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12138194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAAFSYQYHP FLVDPAFFPS NMNTPSSPSP PQFHLPQESS FNLTNQETSC VDQSSKITIS  60
DNEPSVTKNL SPQSSVVVDK LETGEQVTQK VNTPPLKKRR TRNGSSLTSN TQSKATDSHS  120
LAERVLYSLN NLKLSMAVRR EKISERMKVL QRLVPGCDKV TGKALMLDEI INYVQSLQNQ  180
VEFLSMKLAS VNPMFYDLST DLDTLLVRPE KLNSMASPSP LPCVSHCNSP NQATTFADTT  240
TMTPTNIFHN ATDYLLDNSA SFFLQGQRST MFSEEDTGSH FWDAEDQRQK FLHPYGFSNN  300
LCSFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0112s00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311070.0KT031107.1 Glycine max clone HN_CCL_82 bHLH transcription factor (Glyma06g17420.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421000.10.0PREDICTED: transcription factor bHLH137
TrEMBLA0A0L9UEA20.0A0A0L9UEA2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RF750.0A0A0S3RF75_PHAAN; Uncharacterized protein
STRINGXP_007137888.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-39bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]