PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0071ss00600.2 | ||||||||
Common Name | LR48_Vigan192s000700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 202aa MW: 22823.2 Da PI: 4.8475 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+ Ed++l ++++ +G g W+ +++ g Vang0071ss00600.2 14 KGAWTALEDKILTEYINVHGEGKWRHLPKRAG 45 79**************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-10 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.36E-7 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.667 | 9 | 55 | IPR017877 | Myb-like domain |
CDD | cd00167 | 0.00122 | 16 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MGRSPCCSKE GLNKGAWTAL EDKILTEYIN VHGEGKWRHL PKRAGVQHDQ NLKNQEWQYD 60 KGSCLVQTKA TRWSKVTVSD EISHHNDEDN KSNVGDHSKM KAFLVSPSSE SKNDPVLNFM 120 ENLEMDGSFF SELLKMDFPE SSCQGNKILE DNDNPSSVEK GYLSPKSSCE TTHFSWGDSL 180 YDPNFEFLPV TTFTETGFDW L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0071ss00600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515267.1 | 1e-107 | myb-related protein 308-like | ||||
TrEMBL | A0A0L9T6S2 | 1e-111 | A0A0L9T6S2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135450.1 | 2e-89 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07690.1 | 6e-17 | myb domain protein 29 |
Publications ? help Back to Top | |||
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