PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0069ss01820.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 407aa    MW: 43727.7 Da    PI: 8.0113
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0069ss01820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.5e-18238272135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Vang0069ss01820.1 238 CLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRL 272
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-16232282IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.321232268IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-13235294No hitNo description
Gene3DG3DSA:3.30.50.103.0E-14236270IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.58E-13237284No hitNo description
PROSITE patternPS003440238263IPR000679Zinc finger, GATA-type
PfamPF003202.5E-15238272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEAPEYFVGG YFAAGGADQF TQQDKRHADQ KIGESFAIDD LLDFSHADAI MSDGFFDNVA  60
GNSTDSSTVT AVDSCNSSIS GSDNRFAAAI VPRGYAGDPQ FSGELCVPYD DMAELEWLSN  120
FVEDSFSAEE ELKTLQLLSG AAASTAIGAK PQTPESSSST DTLPPFASDE TARNAPFLHT  180
ETPLPGKARS KRSRAAPGDW STRLLRLVAP EQERPPQAKD SPVKKREGTN AECSGRKCLH  240
CGAEKTPQWR TGPMGPKTLC NACGVRFKSG RLVPEYRPAA SPTFVSTKHS NSHRKCSTWW  300
VVGLVVGPVV GHTIWWSVNL LVGRPGGARR PNRIRPSLKP HFPVSENRQP QAAPDSKRQA  360
APDGKRQAGS DKRATPPVAR AAPSGPRPTP SEKQKEKGEK GDLDLD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0069ss01820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407460.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826321e-64GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A0L9TAD80.0A0A0L9TAD8_PHAAN; GATA transcription factor
TrEMBLA0A0S3T0930.0A0A0S3T093_PHAAN; GATA transcription factor
STRINGXP_007135644.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-63GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]