PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0065s00360.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 273aa    MW: 28287.9 Da    PI: 6.2403
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0065s00360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP87.33.4e-27110324128
               TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..................kaaksaaks 97 
                       ++a caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s++                  +        
  Vang0065s00360.1   1 MPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSTMSAPshyfrgnyfnpstfststA-------- 85 
                       9**********************************************99977777777777555554445444443333333322........ PP

               TCP  98 kksqksaasalnlakesrakarararertre 128
                                    a+   a+ r ra+   + 
  Vang0065s00360.1  86 -------------AAAAAAQLRNRAEWDRSM 103
                       .............223333333333332222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.141139IPR017887Transcription factor TCP subgroup
PfamPF036349.0E-271117IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MPAACAARVF QLTRELGHKS DGETIEWLLQ QAEPSVIAAT GTGTIPANFT SLNISLRSSG  60
STMSAPSHYF RGNYFNPSTF STSTAAAAAA AQLRNRAEWD RSMSMVMEDS RRSMLENTSS  120
ISAILNFNPM GNINVIQQAK QELREESGGG LESVASDSVG SLGRKRRPEQ ELSQMGSYLI  180
QSSTGSLPSS HASNTAAFWM VAGHGNQSTS GGGGGGSGNG NDNPIWAIPS VGNSGVYRGG  240
IQMPANGVSE SPGSGGQPHG GDDGRDSTSQ HS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0065s00360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519330.11e-162transcription factor TCP15
TrEMBLA0A1S3VM091e-161A0A1S3VM09_VIGRR; transcription factor TCP15
STRINGXP_007157639.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.15e-35TCP family protein