PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0058ss00540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YA | ||||||||
Protein Properties | Length: 243aa MW: 27419.6 Da PI: 10.2919 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.8 | 2.3e-30 | 121 | 177 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RR Rakle ++k +k rkpylheSRh hA++R+Rg gGrF Vang0058ss00540.1 121 EEPIYVNSKQYHAILRRRLYRAKLEVQNKP-IKDRKPYLHESRHLHAVNRARGAGGRF 177 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.2E-33 | 119 | 180 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 33.954 | 120 | 180 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.1E-25 | 122 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.2E-22 | 123 | 145 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 125 | 145 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.2E-22 | 154 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVSWAGQKTM NCSSWGTSES RSLSLKVDFL PQQCHRSKTL SFQFQEQDSS SIHSGQSSTR 60 LGSAQSGEMS VQHSSTGSTP QHRSFMQNHD FTFPPPLLDH SQTLPVEATP IRIPLQLDIK 120 EEPIYVNSKQ YHAILRRRLY RAKLEVQNKP IKDRKPYLHE SRHLHAVNRA RGAGGRFLNT 180 KKLQQSTRTL GNTAESNMHK IENYRDGDNA TYASNTAARN MQNYTSDKGG GTTHQQPLFV 240 YM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-19 | 121 | 181 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0058ss00540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-145 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424849.1 | 1e-163 | PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Refseq | XP_017424850.1 | 1e-163 | PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
TrEMBL | A0A0S3SFW1 | 1e-161 | A0A0S3SFW1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150480.1 | 1e-125 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10120 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-36 | nuclear factor Y, subunit A5 |