PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0057ss00140.1 | ||||||||
Common Name | LR48_Vigan03g306800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 356aa MW: 39526.2 Da PI: 5.9003 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.2 | 3.7e-07 | 152 | 173 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Vang0057ss00140.1 152 FCEICGKGFRRDANLRMHMRAH 173 6*******************99 PP | |||||||
2 | zf-C2H2 | 11 | 0.0014 | 236 | 259 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k+Fs s+Lk+H + + Vang0057ss00140.1 236 YSCTRCNkKHFSVLSDLKSHVKHC 259 99******************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.29E-6 | 148 | 174 | No hit | No description |
SMART | SM00355 | 0.0017 | 151 | 173 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.905 | 151 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.7E-6 | 153 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 27 | 198 | 231 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 25 | 236 | 258 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 290 | 260 | 288 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 356 aa Download sequence Send to blast |
MPNSNSNPNA DPTLNFNTQD PNVTANPQLP LQNLSQVRAR IDSLQHFLSQ SISTSTPLTT 60 DQIAMVSTHI ISSIHQIIVN GAALVTYSQH STAAVTPDAS SYPKPEHSAT DKHKQLLDSK 120 LEPPEDGDGV EDDDCEIVEL DAVELLAEHI HFCEICGKGF RRDANLRMHM RAHGDQFKTP 180 EALARPSETG SAKGAMRFSC PFEGCNRNKL HQRFRPLKSA LCLKNHFKRS HCPKMYSCTR 240 CNKKHFSVLS DLKSHVKHCG ECRWKCTCGT RFSRKDKLFS HIALFEGHAP ALACDEEDKG 300 KQVAEGDDEN PMLTTDSGFE LDNCFGDEEL PEGFFDDFGS IDDYSLEEVL GFLSN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0057ss00140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418585.1 | 0.0 | PREDICTED: zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 3e-72 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A0L9UAF7 | 0.0 | A0A0L9UAF7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S0Z4 | 0.0 | A0A0S3S0Z4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163652.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22890.1 | 4e-72 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|