PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss00020.1
Common NameLR48_Vigan03g308500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 303aa    MW: 34560.2 Da    PI: 4.6232
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65e-1961114356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Vang0057ss00020.1  61 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 114
                        566899***********************************************9 PP
2HD-ZIP_I/II130.85.3e-4260152193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++dalk + ++L++++e+Lr+++k
  Vang0057ss00020.1  60 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIK 151
                        69****************************************************************************************99 PP

        HD-ZIP_I/II  93 e 93 
                        e
  Vang0057ss00020.1 152 E 152
                        7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1946118IPR009057Homeodomain-like
PROSITE profilePS5007117.79956116IPR001356Homeobox domain
SMARTSM003896.3E-1859120IPR001356Homeobox domain
PfamPF000463.2E-1661114IPR001356Homeobox domain
CDDcd000865.88E-1661117No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2063123IPR009057Homeodomain-like
PRINTSPR000318.3E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000318.3E-696112IPR000047Helix-turn-helix motif
PfamPF021833.1E-17116157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKRLSSSDSS STPLITVCPS TEEHSTRNCQ QHVYGREFQS MMLEGLDEEG CVEEVGHQSE  60
KKRRLSVDQV KALEKNFEVE NKLEPERKVK LAQELGLQPR QVAVWFQNRR ARWKTKQLER  120
DYGVLKANFD ALKLNYDTLN HDNEALRKQI KELKSRLEEE NTGSGVSVKE EIMMPDSDDK  180
TTMEQQSKSE PSSESEDQLN YECLNNNKNS ACFGGASLFP VDFKDGSSDS DSSAILNEEN  240
HCSPITEHLL LSPESSSMNC LQFQKAYQAQ YVVKMEEHNF FSADEACNFF SDEQAPTLQW  300
WS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss00020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419539.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
SwissprotP466689e-71ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLA0A0L9UAB40.0A0A0L9UAB4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S1070.0A0A0S3S107_PHAAN; Uncharacterized protein
STRINGXP_007163670.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.14e-66homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]