PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0057s00530.1 | ||||||||
Common Name | LR48_Vigan03g315900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 30283.8 Da PI: 6.8719 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.7e-18 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Vang0057s00530.1 49 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 98 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-21 | 49 | 106 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-11 | 49 | 98 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.87E-30 | 49 | 105 | No hit | No description |
PROSITE profile | PS51032 | 22.115 | 49 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 49 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-33 | 49 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEEAMRRLNG VAPILGPDPK ESSVVENPKR STAVNKRTLR EDGGGGAMRY RGVRRRPWGR 60 YAAEIRDPQS KERRWLGTFD TAEEAACAYD CAARAMRGLK ARTNFVYPTS PQASSATADH 120 FFHSFSDDDS GSGFFSRESS DSGLLEEIVN KFLPKAKPNK CESLPKMESV RNPQESVLPS 180 LISESTLVST AQCYDDTKKG FHKNESFGFS FDHQGLPMQK FDNFNGFHHL QGMAMGNEQT 240 MTNHAENCIV EDVFQYQELL NSFAIRMQNA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 49 | 105 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0057s00530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418154.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A0L9UB37 | 5e-99 | A0A0L9UB37_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T303 | 5e-99 | A0A0S3T303_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158394.1 | 9e-86 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 2e-14 | DORNROSCHEN-like |
Publications ? help Back to Top | |||
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