PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0051s00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 593aa MW: 66492.5 Da PI: 9.5808 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.2e-08 | 500 | 549 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + ++ k+Rt ++k++w ++ Vang0051s00080.1 500 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 549 567888999**********************99**************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.674 | 495 | 554 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-7 | 499 | 552 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 500 | 550 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.23E-16 | 501 | 551 | No hit | No description |
SuperFamily | SSF46689 | 1.11E-15 | 501 | 582 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 593 aa Download sequence Send to blast |
MMLQKKVNYG FNGYKGPAIP KASRSIRGRG TIKKKPENNQ IQAFEILANV AGNFLQESEN 60 SGLDNVASAK DPHTFSSADM KDKLEDERGS FKKDPCEHGN CSEIVSACVP SRQGKHENLR 120 VMDSSSFPGN HLEGQGQNIL EREDERGKRR RVNEKSTHIK GCFEGLIEPS CKVSKDCSSE 180 NNVAKSSLEG HRHIDSFPNT SSGRKLGRDD DENLVNSTQL NSRDKIYSTP PDMHKLKYAS 240 SLMSDENNSR DNSELENLQR MYPFKKRKFF NQTSSSTSDR GSQCQGTFDS SDTTRVNDTN 300 HAIEESSSIV GQQVHSGSKG CNGLNEFHFY LTVKLSIKSF KVPELFINIP ETATIGSLKG 360 KKVRDDSKTL IQTGISQDEK RHRLGFMLEP RHTSNSPSSC NDNPCFLTTG SQQKLSKQST 420 SLMLQQGTYN VSQERSRIKI ESCVEGDLNV VSSQPDTYAN NNVAKCRTLV AVPAINMEAL 480 AVVPFRRKSG NPDFAQRRIR RPFSVLEVEA LVQAVEKLGT GRWRDVKQRA FDHAKHRTYV 540 DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLAAHAYW SQQQCKHQLK PL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 2e-52 | 484 | 592 | 1 | 109 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 147 | 151 | KRRRV |
2 | 258 | 267 | QRMYPFKKRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0051s00080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416621.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
TrEMBL | A0A4D6NGN9 | 0.0 | A0A4D6NGN9_VIGUN; Uncharacterized protein | ||||
STRING | XP_007140327.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13188 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07540.1 | 6e-76 | TRF-like 2 |