PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0045ss01150.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 280aa    MW: 31471 Da    PI: 5.1309
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0045ss01150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.9e-0997140346
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv 46 
                        k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV +
  Vang0045ss01150.1  97 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAI 140
                        566899************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-878140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-989139IPR009057Homeodomain-like
PROSITE profilePS500719.13592152IPR001356Homeobox domain
SMARTSM003890.002495152IPR001356Homeobox domain
PfamPF000463.1E-697140IPR001356Homeobox domain
CDDcd000861.00E-697140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
LPKQNKGIKF KLLDLITSVL CTHEETWQLR FSGCSHDHLS TNRQTTKPVA LTMIMSDLHS  60
DEHSPRNNHV YGREFQSMLE GLDDEGCVEE PGHHAEKKRR LSVDQVKALE KNFEVENKLE  120
PDRKVKLAQE LGLQPRQVAI KELKSRLLLQ EESNTESDVS VKEEMITLQD SNPLCETAIP  180
GSESKELSYE CFNKSDEVLG AFKDGSSDSD SSAILNEENA NNNDNSPKNG TISSSGVMQS  240
QSFLSSSSPM NCFQFQKQFP TQVYSNGERS FVKRERVAW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0045ss01150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410280.11e-113PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A0L9TJK41e-112A0A0L9TJK4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QYJ61e-112A0A0S3QYJ6_PHAAN; Uncharacterized protein
STRINGXP_007159709.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-28homeobox protein 16