PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0045ss01130.1
Common NameLR48_Vigan1300s000900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 332aa    MW: 37994.2 Da    PI: 6.9239
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0045ss01130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-056589123
                       EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                       y+C+   Cgk F ++s LkrH   H
  Vang0045ss01130.1 65 YVCHyeGCGKKFLDSSKLKRHFLIH 89
                       9********************8877 PP
2zf-C2H221.94.6e-0795119123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++Cp   Cgk Fs   nL++H++tH
  Vang0045ss01130.1  95 FVCPheGCGKAFSLDFNLRSHMKTH 119
                        89**********************9 PP
3zf-C2H2188.1e-06125149123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        + Cp  dCgk++ + + Lk+Hi +H
  Vang0045ss01130.1 125 HICPypDCGKRYAHEYKLKNHIASH 149
                        679999*****************96 PP
4zf-C2H212.80.00035189214123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        y Cp   C k + + + L+ H+++ H
  Vang0045ss01130.1 189 YACPydGCEKAYIHEYKLRLHLKReH 214
                        89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.61E-95393No hitNo description
Gene3DG3DSA:3.30.160.602.0E-146285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.9216594IPR007087Zinc finger, C2H2
SMARTSM003550.00246589IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806789IPR007087Zinc finger, C2H2
SuperFamilySSF576674.98E-1380122No hitNo description
Gene3DG3DSA:3.30.160.605.5E-2086121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.69595124IPR007087Zinc finger, C2H2
SMARTSM003553.1E-495119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-8111151No hitNo description
Gene3DG3DSA:3.30.160.609.9E-9122149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.473125154IPR007087Zinc finger, C2H2
SMARTSM003550.0028125149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127150IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-5184212No hitNo description
Gene3DG3DSA:3.30.160.605.4E-9185211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.009189214IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616189219IPR007087Zinc finger, C2H2
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEIHYSSSYF ERRPILKSKA PAVKWVKEWV PQDLVTTGGK CMLLKWVTDA GALRKHSHIH  60
GERQYVCHYE GCGKKFLDSS KLKRHFLIHT GERDFVCPHE GCGKAFSLDF NLRSHMKTHS  120
QENYHICPYP DCGKRYAHEY KLKNHIASHH EKNASVDVTK YTTPPSEKQT KTAKSSGGAY  180
GSASSDRPYA CPYDGCEKAY IHEYKLRLHL KREHPGMMPD ENAEHAQANN VDNEMDEASD  240
QDAYIAKRSN GKIQKQSRPK PSLKLPPSKI AKRKVSTPTL TVNKNSWPVK DEPFDEEDSE  300
ETEEDRDNVE DGWRYTGGNN EDDDEETEYE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-324514915119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0045ss01130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993870.0BT099387.1 Soybean clone JCVI-FLGm-23J16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411441.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-131YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A0L9TIJ70.0A0A0L9TIJ7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QYT10.0A0A0S3QYT1_PHAAN; Uncharacterized protein
STRINGXP_007159566.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-120C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]