PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0041ss00020.1
Common NameLR48_Vigan04g180900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 503aa    MW: 55337.8 Da    PI: 6.0663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0041ss00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.45e-1031094951374
               GRAS   1 lvelLlecAeavss..gdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsv.......selykalppsetsekn....ssee 77 
                        lv+lL+++Aea++   ++  la+ +L rl++l   +++g++m+Rlaayft AL+  l + +       ++ y ++ + + +  +    + ++
  Vang0041ss00020.1 109 LVHLLMAAAEALTGatKSRDLARVILVRLRDLvsHASHGSNMERLAAYFTDALQGLLEGAGgahnnskHHYYITCGSHHPR--DdhhhQNDT 198
                        68**********87336666************55567889****************9763211111103333333333333..23467999* PP

               GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerL 165
                        laa++l++++sP++kf+h+taNqaIleav++e+rvHi+D+di++G+QW++L+qaLas + gpp  +lRiT++++  +g  s  +++etg+rL
  Vang0041ss00020.1 199 LAAFQLLQDISPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASDKTGPPgpHLRITALSRTGTGrrSIASVQETGRRL 290
                        ********************************************************877665556*********888799999********* PP

               GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                        + fA++lg pf f+    +  e++++++L++ +gEal+ n++l+l +l  +    ++ + ++L+  k+l+P++v++ve+e+  + + F+ rf
  Vang0041ss00020.1 291 TAFAASLGQPFTFHQCRLDPDETFKPSSLKLVRGEALVFNCMLNLPHLSYR---APDSIASFLSGAKELKPRLVTLVEEEVGSSVGGFVGRF 379
                        ***************9999****************************9844...4444569******************************* PP

               GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                        +++l++ysa+fdslea++p + ++r+ vEr +lg++iv  +a   +   e+ e+ ++W e+l++aGF+ vp+s  + +qaklll  ++ dgy
  Vang0041ss00020.1 380 MDSLHHYSAVFDSLEAGFPMQGRARALVERIFLGPRIVGSLARIYRT-GEELEERRSWGEWLGAAGFRGVPMSFANHCQAKLLLGLFN-DGY 469
                        *********************************************99.899999**********************************.*** PP

               GRAS 350 rveee.sgslvlgWkdrpLvsvSaWr 374
                        rvee   + lvl Wk+r+L+s+S W+
  Vang0041ss00020.1 470 RVEELgTNKLVLDWKSRRLLSASLWT 495
                        ***98689999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.82283475IPR005202Transcription factor GRAS
PfamPF035141.7E-100109495IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEIDMNTDID AIHNLHFSGY TTITDTTPSS DDDYGCNWNH WSPLVNWDAF TGSHDDFHHL  60
IDSIVSDGPA EYPSPEDHAA SNSPSASITE EDDAEEETAA ADDSKGLRLV HLLMAAAEAL  120
TGATKSRDLA RVILVRLRDL VSHASHGSNM ERLAAYFTDA LQGLLEGAGG AHNNSKHHYY  180
ITCGSHHPRD DHHHQNDTLA AFQLLQDISP YVKFGHFTAN QAILEAVAHE RRVHIVDYDI  240
MEGVQWASLM QALASDKTGP PGPHLRITAL SRTGTGRRSI ASVQETGRRL TAFAASLGQP  300
FTFHQCRLDP DETFKPSSLK LVRGEALVFN CMLNLPHLSY RAPDSIASFL SGAKELKPRL  360
VTLVEEEVGS SVGGFVGRFM DSLHHYSAVF DSLEAGFPMQ GRARALVERI FLGPRIVGSL  420
ARIYRTGEEL EERRSWGEWL GAAGFRGVPM SFANHCQAKL LLGLFNDGYR VEELGTNKLV  480
LDWKSRRLLS ASLWTSSSSD SH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-55954985382Protein SCARECROW
5b3h_A2e-55954984381Protein SCARECROW
5b3h_D2e-55954984381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0041ss00020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421365.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A0L9UFX10.0A0A0L9UFX1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RDI80.0A0A0S3RDI8_PHAAN; Uncharacterized protein
STRINGXP_007137382.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-147GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]