PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0039ss01220.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 368aa    MW: 40760.6 Da    PI: 6.4288
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0039ss01220.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.42.8e-171151892498
              NF-YC  24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                        arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl div r
  Vang0039ss01220.2 115 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKYCVQSYNVFDFLRDIVSR 189
                        8***********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008088.3E-17115174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.0E-23115189IPR009072Histone-fold
SuperFamilySSF471132.1E-19121190IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MPVRPEATTV VDEGELDDDS FNRLTKVQKK KKEWRVELAA PVPSPPCSQC CATIGPSEPF  60
PHSCVTLQVP SIVKLYSSSW SFGYVAEFNT WRKSSARKEI FLKNALSDGN YNFQARIKKI  120
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNALHL KYCVQSYNVF  180
DFLRDIVSRV PDYGHGHGHS EAGADDRALS KRRKAAGVEG NESDEEAKRS KMRELGHTST  240
TSRGRGRGKG RGRGRGVRTV ERDIIHQQVE SEPCSSIQQI SNDMPNTSLP IDNGVQSKEY  300
TKETSAAHEE SAQSFRNIDL NANLNENGDK NASAAVEAPL PEPADMDIKH EEIPGWPCLD  360
TLNNENL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-171151751575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246255RGKGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0039ss01220.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425617.11e-180PREDICTED: dr1-associated corepressor homolog isoform X1
TrEMBLA0A0L9UKN41e-174A0A0L9UKN4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SIY71e-174A0A0S3SIY7_PHAAN; Uncharacterized protein
STRINGXP_007148787.11e-134(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.16e-64nuclear factor Y, subunit C11