PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0033ss01490.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 203aa    MW: 21942.5 Da    PI: 6.2744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0033ss01490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-07931321255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Vang0033ss01490.1  93 RREKISERMKILQDLVPGC----DKVIGKALVLDEIINYIQSLQ 132
                        9*****************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.6981131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1388148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-789137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-793136No hitNo description
PfamPF000101.3E-493132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1494150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDPGGMMNEG SFANNGSGNT APYSLAEIWQ FPQAINGGGG LGLRSPQFEH GPGQFGDLPP  60
RPNNGLGTSN TRKRRDSEDD SAKTVSTSNA VARREKISER MKILQDLVPG CDKVIGKALV  120
LDEIINYIQS LQRQVEFLSM KLEAVNSRLN SGIEAFPPKD FGQHAYDPAG MPFGSQAPRE  180
YSRGSSPEWL HMQVGGGFER TT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0033ss01490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-151AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027917515.11e-107transcription factor BHLH089
SwissprotQ84T081e-57BH089_ORYSJ; Transcription factor BHLH089
TrEMBLV7CAC21e-105V7CAC2_PHAVU; Uncharacterized protein
STRINGXP_007153872.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-68BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]