PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0030ss00170.1 | ||||||||
Common Name | LR48_Vigan05g209700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24879.2 Da PI: 6.5074 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 49 | 100 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g+ Vang0030ss00170.1 49 PVYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKGH 100 68*****998.**********843...6************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-13 | 49 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-31 | 50 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-35 | 50 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.181 | 50 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-21 | 50 | 108 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-9 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.27E-31 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 1.9E-9 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MIDTPCHKTP GSSTNNPSTS KPHKTETPKQ SKTQKQSKLK RNRDPTKHPV YHGVRMRNWG 60 KWVSEIREPR KKSRIWLGTF ATPEMAARAH DVAALSIKGH TAVLNFPNLV NMLPRPVTCA 120 PRDIQVAAAE AAAMVEFDRE CSDEAESSEL SEIVELPNIE ESLESVESRS EFAFIDSVDS 180 WLYPPMAVGS ICEMMVGEDE CGFFHFQTDH QKTCSVQFQL F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 46 | 112 | 10 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0030ss00170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424637.1 | 1e-166 | PREDICTED: dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9LYD3 | 2e-58 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A0L9UPJ9 | 1e-165 | A0A0L9UPJ9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SFM3 | 1e-165 | A0A0S3SFM3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150657.1 | 1e-135 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-52 | ERF family protein |
Publications ? help Back to Top | |||
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