PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0022ss03740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 158aa MW: 18790.6 Da PI: 10.5559 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41 | 3.3e-13 | 15 | 76 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 + kR+++tkeq+ L++lF r+p++e+ +A+kl ++ e V+ WFqN +++++ Vang0022ss03740.1 15 KYKRWSPTKEQVALLKALFVHgIRNPNREQANXIAEKLrvygEVREFSVQHWFQNYGYRYRQ 76 579****************988*********************************8665554 PP | |||||||
2 | Wus_type_Homeobox | 67.7 | 2.1e-22 | 16 | 78 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQ+ +L++l+ +G+r+Pn+e+ + i+++L+ yG++++ V +WFQN R rqk+ Vang0022ss03740.1 16 YKRWSPTKEQVALLKALFVHGIRNPNREQANXIAEKLRVYGEVREFSVQHWFQNYGYRYRQKR 78 68****************************************************999998884 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.34E-10 | 7 | 80 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-7 | 9 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.807 | 12 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-4 | 14 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.7E-11 | 15 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.66E-4 | 15 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MDQNLPNQQV QDKKKYKRWS PTKEQVALLK ALFVHGIRNP NREQANXIAE KLRVYGEVRE 60 FSVQHWFQNY GYRYRQKRRK RSTTTISYSP IPLLLDGKKK IYFFFICIII FFFFCILTFL 120 IFFCCFCFFF RSIKNIAASA RSSDTRSLSD PTCSRQS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0022ss03740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409897.1 | 2e-36 | PREDICTED: WUSCHEL-related homeobox 7-like | ||||
Refseq | XP_017420310.1 | 2e-36 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
TrEMBL | A0A0S3TET2 | 2e-57 | A0A0S3TET2_PHAAN; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-12 | WUSCHEL related homeobox 2 |