PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0022ss01500.1 | ||||||||
Common Name | LR48_Vigan05g007300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 757aa MW: 81697.7 Da PI: 5.716 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.3e-07 | 302 | 322 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Vang0022ss01500.1 302 PCPEFRK-GACRRGDMCEYAHG 322 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.8E-17 | 30 | 163 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.97E-15 | 36 | 162 | No hit | No description |
Pfam | PF12796 | 2.4E-10 | 79 | 151 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-16 | 84 | 163 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.467 | 84 | 192 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0094 | 84 | 114 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.209 | 119 | 154 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.9E-4 | 119 | 151 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.5E-6 | 297 | 323 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 302 | 322 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 302 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 330 | 360 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 47 | 332 | 355 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MCRGPEKSES LSTPSSSAVE GSTRAEDMKD LTVCPEDSFS CLLELASNND FEDFKLALDS 60 DISLINEVGL WYVRQIGSKQ IVLEHRTPLM VAAMYGSVDV LKLILSCPEV DVNFSCGTDR 120 STALHCAASS GSLNAVDVVK LLLSSGADVR CVDGNGNRPV DVIVVPPKLK GLKASLEDLL 180 SDSGCDGSVG DCFIPLAVNS SCSDSATHFL SPENGLPSSP MASKFTDTTV NSASEKKEYP 240 TDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPEFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GVSCNRRVCF FAHTAEELRP 360 LYVSTGSAVP SPRSSASTPN VMDMAAAMSL FPGSPSSLSG MSPSPFAQQM SPSGGILHSS 420 SAWPQPNVPA LHLPGSNIQT SRLRSSLNAR DMPPEDLDVL QDFDGQQHLL NDLSCFSQPR 480 PGAISVKRSG RSKTLTPSNL DDLFSAEISS PRYSDPAAAC VFSPTHKSAV FNQFQQLQSS 540 LSPINTSVSS PRNVEHTLLQ ASFGVSSPGR MSPRSLEPIS PMSARLSALA QRDKQQLRSL 600 SSRDLGAHNP VSIVGSPGNS WSNWGSPHGN GKVDWSINGN ELGRLQRSSS FELGNNGEEP 660 DLSWVQSLVK ESPSEIKEKL AGSGGPVVSA DGQNSNPQVE SIDHSVLGAW LEQMQLDQLD 720 MGQLQVDVKI ALIIVLMGTK EDMGSGPTHI RYSDTP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0022ss01500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017425158.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1 | ||||
Refseq | XP_017425159.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A0L9UIU5 | 0.0 | A0A0L9UIU5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SKN7 | 0.0 | A0A0S3SKN7_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA15G43030.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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