PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss02700.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 327aa    MW: 38285.4 Da    PI: 7.9321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss02700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.2e-101637425
                       ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                       ++C+f+++ G C++GdrC+F H
  Vang0021ss02700.1 16 VNCPFYFKIGACRHGDRCSFLH 37
                       68******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4411240IPR000571Zinc finger, CCCH-type
SMARTSM003560.00381239IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-71637IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-51740IPR000571Zinc finger, CCCH-type
PRINTSPR018484.4E-251837IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:4.10.1000.103.9E-51838IPR000571Zinc finger, CCCH-type
PRINTSPR018484.4E-253757IPR009145U2 auxiliary factor small subunit
PRINTSPR018484.4E-257590IPR009145U2 auxiliary factor small subunit
PROSITE profilePS501038.737122148IPR000571Zinc finger, CCCH-type
SMARTSM003566.2122147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAEHLPSIFG TGKVMVNCPF YFKIGACRHG DRCSFLHTKP SISLTILLSN MYQRSDMITP  60
GVDAHDNPID PRKIQEHFEE FYEDIFEELS KEDEHAANAV RNLTGRFYAG RPVIVDFSPV  120
TDFRGVTCRQ YEENTCNRRG CNFMHLKRIS RDLRHQLFGK HHRRHSRSRS PYGHRSHDER  180
SHLSHSRKYD DRDHHHESRE LLKRSEPPPS WHNKSPISQI QHNNSLISQI LADILLRNPF  240
DSMPSPLSIL GIPRDFQFSQ FPQFSPNSHI VPLYLIIPCI LPFSEKFELV IKNTLWLAPQ  300
LPSDVLWVYW NDTDDTSYKW WVVSWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-3911571179Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss02700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-150AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635439.11e-130splicing factor U2af small subunit B
RefseqXP_022635440.11e-130splicing factor U2af small subunit B
SwissprotQ9ZQW87e-81U2AFA_ORYSJ; Splicing factor U2af small subunit A
TrEMBLA0A0L9UNK61e-131A0A0L9UNK6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SGX01e-131A0A0S3SGX0_PHAAN; Uncharacterized protein
STRINGXP_007150110.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1251810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.14e-23C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]