PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss02170.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 308aa    MW: 33752.3 Da    PI: 9.5294
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss02170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19222255134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Vang0021ss02170.1 222 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 255
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-17216266IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.07216252IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-14217278No hitNo description
Gene3DG3DSA:3.30.50.108.7E-15220253IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.16E-15221268No hitNo description
PROSITE patternPS003440222247IPR000679Zinc finger, GATA-type
PfamPF003203.2E-17222255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
LEDVEDDWDS QFKCLEHQHS EVFSASSNGL CAKTQTENPQ FGTEFSVSVS ILSAVMVGQG  60
LMSPKSLFAC AMGPPPYLHC NGISPIKQLA KAPGPTIPLK NVTFNGKDLH RFRTYSPVSV  120
FESSSSSSVE NSSFDRPVIP VKRARSKRHR RLSFSPLFSI PVVQALQKQQ RTSASESDFG  180
TNVAGNMSNK VKSHKKKDLS LPSEDVELMR SSHLVSDPPR KCTHCEVTKT PQWREGPMGP  240
KTLCNACGVR YRSGRLFPEY RPAASPTFVA SLHSNCHKKV VEMRSLVQED VRGSVFASSN  300
LHGNSVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss02170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425761.10.0PREDICTED: GATA transcription factor 11 isoform X1
RefseqXP_017425762.10.0PREDICTED: GATA transcription factor 11 isoform X2
TrEMBLA0A0L9UN400.0A0A0L9UN40_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SGL40.0A0A0S3SGL4_PHAAN; Uncharacterized protein
STRINGXP_007150193.11e-164(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.29e-38GATA family protein