PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss01810.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 504aa    MW: 55251.1 Da    PI: 8.3804
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss01810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.5e-13256306155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+       g   ++k+++lg f+++ eAa+a+++a+ k +g
  Vang0021ss01810.1 256 SKYRGVTLHK-CGRWEARM------GqflRKKYIYLGLFDSEVEAARAYDKAAIKCNG 306
                        89********.7******4......334345**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.02166221IPR001471AP2/ERF domain
SMARTSM003801.4E-5172227IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-6189221IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-8191221IPR001471AP2/ERF domain
CDDcd000182.04E-25256316No hitNo description
SuperFamilySSF541717.19E-17256315IPR016177DNA-binding domain
PfamPF008471.1E-8256306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-16257314IPR001471AP2/ERF domain
PROSITE profilePS5103215.817257314IPR001471AP2/ERF domain
SMARTSM003801.7E-32257320IPR001471AP2/ERF domain
PRINTSPR003675.5E-6258269IPR001471AP2/ERF domain
PRINTSPR003675.5E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
AFILSVPDPV TSLTLSPVPW NPVAPKVLFS PVLKSSQGNY KCNYQSSQCF LLTPSSQDSV  60
MLLDKFPEAS SGTSNSSVVN AEGSSNEDSC STRAGEVFTF NFGILKVEGA DDVVVSATKE  120
LFPASAENWQ GQSSTSSFQA RKSLVDLSLD RQNGEVKVVQ VQQQPQVKKC RRGIAGNKSI  180
WRLVIRLLFI VGGFDTAHAA ARAYDRAAIK FRGLDADINF NLVDYEEDLK QMKNLSKEEF  240
VHILRRHSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLRKK YIYLGLFDSE VEAARAYDKA  300
AIKCNGREAV TNFEPSTYDS EMKPEAINEG GNHDLDLNLG IATPGHGPKE NIGHLQFQHV  360
PCSTQPGRIS RMETNFSSVI GDPSLKRHVV TEERPSVWNA AHYTFFPNLE RAERIGIDPS  420
KGVPNWAWQT HGQVTANPVP PFSSAASSGF SISATFPPNA IFPTKSVNSI PQNLCFTSAS  480
APGSNTPQFY YEVKSTQAPS HPI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss01810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425768.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8AXC36e-85AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0L9UNS60.0A0A0L9UNS6_PHAAN; Uncharacterized protein
STRINGXP_007150248.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.36e-89related to AP2.7