PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0021ss01400.1 | ||||||||
Common Name | LR48_Vigan05g188500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 198aa MW: 22487.5 Da PI: 10.2011 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.2e-19 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ Le+l+++ r+p+ae+++e +++l +++ ++V++WFqN++a++++ Vang0021ss01400.1 18 SRWSPTREQIAMLEDLYRQgMRTPNAEQIQEVTSRLraygHIQGKNVFYWFQNHKARQRQ 77 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 112.9 | 1.6e-36 | 17 | 79 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt eQi +Le+ly++G+rtPn+e+iq++t++L++yG+i++kNVfyWFQN+kaR+rqkq Vang0021ss01400.1 17 VSRWSPTREQIAMLEDLYRQGMRTPNAEQIQEVTSRLRAYGHIQGKNVFYWFQNHKARQRQKQ 79 68***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.59E-12 | 12 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.046 | 13 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-5 | 15 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-17 | 18 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-8 | 18 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.32E-4 | 19 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGSRSAMRRE PSRTHSVSRW SPTREQIAML EDLYRQGMRT PNAEQIQEVT SRLRAYGHIQ 60 GKNVFYWFQN HKARQRQKQK LESIAYSNSF LQASHPICQN VVCAPFYPQQ SGMNFYPQPE 120 KVVATGGIVG TVVPFGMLKI CDGQQIYQQL RQRVQPDYNY SINDKKTLNL FPLHPTGILK 180 EKTVNQGSSH ASASGCH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0021ss01400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-167 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423722.1 | 1e-148 | PREDICTED: WUSCHEL-related homeobox 2-like | ||||
Swissprot | Q6X7K1 | 6e-39 | WOX2_ARATH; WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A0L9UN03 | 1e-147 | A0A0L9UN03_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SGD4 | 1e-147 | A0A0S3SGD4_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA13G41000.1 | 4e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-41 | WUSCHEL related homeobox 2 |
Publications ? help Back to Top | |||
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