PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0013ss00490.1 | ||||||||
Common Name | LR48_Vigan08g109000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 342aa MW: 37780.5 Da PI: 5.2448 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 136 | 185 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Vang0013ss00490.1 136 ISGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 185 58*****9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.9E-37 | 135 | 198 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.641 | 135 | 192 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-12 | 136 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-9 | 136 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 137 | 193 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.04E-31 | 138 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-30 | 138 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-9 | 158 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
LVVVMASNSG KSGKEGVEET HHHVVFGESE GRDSEKEKGK CVDLSSGRRQ WKPVFDDASI 60 SQRPLKKIRS PEHQSPNQQP SSSSSSMLSL QPPSSRIVFP FAFEGNQHPM PSFPHSFGTT 120 NLPLFRPPLQ PTQQMISGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAED AAMAYDREAF 180 KLRGENAKLN FPELFLNKDK AEPSTPAPAS SSNEGSTSTS SQNTKQPEPV PEETNTESED 240 MPPTETLAEE NAETEEGVSQ PQELVWGEWF NTIPAGWGPG SPVWDDLDHN NLLLHSQLPF 300 VNQSHQEFHH DAAGASSQTQ QDNNNAGPGS SSPSCSMRPF F* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 138 | 192 | 5 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0013ss00490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493537.1 | 1e-144 | ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A1S3TIE6 | 1e-143 | A0A1S3TIE6_VIGRR; ethylene-responsive transcription factor ERF054-like | ||||
STRING | XP_007132714.1 | 1e-124 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4268 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20880.1 | 2e-48 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|