PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss01790.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 417aa    MW: 45544.1 Da    PI: 5.0533
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss01790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.2e-11172223155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.aeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f++  e A +a+++a+ k +g
  Vang0010ss01790.1 172 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSeVEAASRAYDKAAIKCNG 223
                        89********.7******5553..2.26**********7889*********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.11376137IPR001471AP2/ERF domain
SMARTSM003804.0E-1292143IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-9101138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-11102138IPR001471AP2/ERF domain
CDDcd000181.07E-24172233No hitNo description
SuperFamilySSF541712.03E-14172232IPR016177DNA-binding domain
PfamPF008474.6E-7172223IPR001471AP2/ERF domain
SMARTSM003801.7E-29173237IPR001471AP2/ERF domain
PROSITE profilePS5103212.839173231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-13173231IPR001471AP2/ERF domain
PRINTSPR003674.0E-6174185IPR001471AP2/ERF domain
PRINTSPR003674.0E-6213233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLDLNLNAEW TDSARDGDSP VPLEEFPEGS RNQMAESGTS NSSVVNADGS SNGCCDEDSC  60
STRADDVYTF NFDILKVEGA SDVVTKELFP VSGGVATSSD CGKQVYLGGF DTAHAAARAY  120
DRAAIKFRGV DADINFNLSD YEDDLRQLKN LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH  180
KCGRWEARMG QFLGKKYIYL GLFDSEVEAA SRAYDKAAIK CNGREAVTNF EPSTYEGEMK  240
SAATNEVNNH NLDLNLGIAT PGTGSKENWQ RLQFPSVHYN THGGISSMME TNVDSGVGNP  300
SLKRLVVNED CPSVWNGMCP SFFPNEQEKT ERMNTEHSKG LPNWAWQTHA QVNATPVPTF  360
SAAAASSGFS ISATFPPTAT FPTRSTNSNP QSLCFTSSSM HSSEYYYQVK PRQAPL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss01790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433759.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AXC38e-87AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0S3SD020.0A0A0S3SD02_PHAAN; Uncharacterized protein
STRINGGLYMA12G07800.10.0(Glycine max)
STRINGXP_007132160.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-92related to AP2.7