PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0010ss00970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 39303.4 Da PI: 5.2857 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.8e-13 | 289 | 334 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +A+eYIk+Lq Vang0010ss00970.1 289 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAIEYIKDLQ 334 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.275 | 283 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-17 | 286 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-12 | 287 | 338 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 288 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 289 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-14 | 289 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MESDLQQHPP MFLDHQQPTN SGLTRYRSAP SSYFSSIIDR EFYEHVFNRP SSPETERMLT 60 RFVNSLGGGD ADADAADAED ALPTQNPSTV VAVKEEIETG RRSASNLIRH GSSPAGLFSN 120 INIESGYAAV RGMGTMGAAN NSTEEANFSP VTRMKNAPNY SSGLMSSRAE IGNKNNTQNN 180 AENEGFADSQ GNEFIPGFPV GSWDDSAIMS DNMTGLKRHR EEDVKPFSGL NLPESQNEAG 240 GQPSTALAHQ LSLPNTSAEM AAIEKFLQLS DSVPCKIRAK RGCATHPRSI AERVRRTKIS 300 ERMRKLQDLV PNMDKQTNTA DMLDLAIEYI KDLQKQVETL SENRDKCTCS HNQQQQQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0010ss00970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031118 | 0.0 | KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017433679.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
Refseq | XP_017433681.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
TrEMBL | A0A0S3SD77 | 0.0 | A0A0S3SD77_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G05930.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 2e-79 | bHLH family protein |