PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss00260.1
Common NameLR48_Vigan08g176100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 288aa    MW: 31833.5 Da    PI: 6.9218
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss00260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.4e-08443540
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvv 40
                        C+ ++++ +++fC  ++  lC+ C  ++H+     H+++
  Vang0010ss00260.1  4 QCDVCHKEVASFFCPADEAALCHACDRTIHHAnklaHKHK 43
                       7****************************64559995543 PP
2zf-B_box28.43.5e-095692438
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38
                       + C+ ++ek++  fC++++ llC++C +++H +   Ht
  Vang0010ss00260.1 56 TLCDICHEKRAYVFCREDRALLCRQCDVSIH-DvneHT 92
                       68****************************9.435576 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.192147IPR000315B-box-type zinc finger
CDDcd000211.44E-7333No hitNo description
PfamPF006432.9E-5445IPR000315B-box-type zinc finger
SMARTSM003365.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.92653100IPR000315B-box-type zinc finger
SMARTSM003368.7E-1353100IPR000315B-box-type zinc finger
CDDcd000211.95E-95699No hitNo description
PfamPF006434.1E-75692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKIQCDVCHK EVASFFCPAD EAALCHACDR TIHHANKLAH KHKRLSLSHP TSIAATLCDI  60
CHEKRAYVFC REDRALLCRQ CDVSIHDVNE HTKTHDRFLF TGITLEEKTR TTSTSSTSNP  120
AQSSLSKENI DSFGSSRTLN NSSSVLTGIT LEEKTRTTST SSTSNENIDP FGSSRTVYNS  180
NSVSTSSLSE YLIQTIPGYC MEDLLDASFA ASNAFSKDYE FPNEDVQVSM CSIPLQTQFN  240
TASNVYPEMP KAKAGEGYSD WIHNSDSAAY KVPSITSPLV KKIKRFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss00260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432732.10.0PREDICTED: B-box zinc finger protein 20-like
TrEMBLA0A0L9V8E60.0A0A0L9V8E6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SDT00.0A0A0S3SDT0_PHAAN; Uncharacterized protein
STRINGGLYMA11G12060.11e-108(Glycine max)
STRINGXP_007131777.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-44salt tolerance homolog2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]