PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0004ss00980.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 392aa    MW: 43448.3 Da    PI: 7.4516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0004ss00980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11107155254
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++ +  rE+ RRdr+N+ f+eL   l ++     +K++Ka+iL+++v+ +k+L
  Vang0004ss00980.1 107 KVLKADREKLRRDRLNEHFQELGNTLDPD----RPKNDKATILTETVQMLKDL 155
                        566789********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.71E-9103159No hitNo description
SuperFamilySSF474596.02E-14103176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.586105155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-12106177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-9107155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-7111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MHTLHAFLSL SKPVFGLDSD CGRGSTNHRP QPRTPKWINQ IHHSPPNPNS LQSRRSTASL  60
PPLTVSAAPS FSGLDAAYSL QTFFQSDFVE RESKGEGEKE DPSASRKVLK ADREKLRRDR  120
LNEHFQELGN TLDPDRPKND KATILTETVQ MLKDLTAEVN RLKTEHKALS EESHELMQEK  180
NELREEKTSL KSDIENLNAQ YQQRVRIMFP WTAIDHSVVI SPPYSYPLPI PIPPAPISIH  240
PSLQPFPFFG NQNPGPIPSP CSMYVPYSTP TNNPVDPPSV LYASTSHLSN QRESFSKSSG  300
DRRPSSDAER CSESHDVATE LELKMPGSSS TQQHYFQFLK ECTSGGRKGK HSVIRDRTII  360
GGSSGSASSR YSSSQGLQDS SNSVGDIPKT D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0004ss00980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426642.10.0PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT237e-74BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0S3T1150.0A0A0S3T115_PHAAN; Uncharacterized protein
STRINGXP_007153217.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-57bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]